BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB006D11LP1|AL425534
(386 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1799 350 2e-96
>3x_Contig1799
Length = 39855
Score = 350 bits (173), Expect = 2e-96
Identities = 196/202 (97%), Gaps = 3/202 (1%)
Strand = Plus / Minus
Query: 1 gatcgactccagacctagagcaagactattgtgattctgatgaagaggaagatttgatcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34963 gatcgactccagacctagagcaagactattgtgattctgatgaagaggaagatttgatcg 34904
Query: 61 tggatttaacgacagggtcgttaaagcccaggaatttgaagaattatctacttatgaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34903 tggatttaacgacagggtcgttaaagcccaggaatttgaagaattatctacttatgaat- 34845
Query: 121 agaggtaaaagaatggcctagagagcctatgacgctatggtattaaagccaataaggggg 180
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34844 -gaggtaat-gaatggcctagagagcctatgacgctatggtattaaagccaataaggggg 34787
Query: 181 tttcacatctactttattktgt 202
|||||||||||||||||| |||
Sbjct: 34786 tttcacatctactttattgtgt 34765
Score = 168 bits (83), Expect = 9e-42
Identities = 87/91 (95%)
Strand = Plus / Minus
Query: 296 cgactawatagaacatatatmctttttkggtaatttaacagacggaattcattatatatm 355
|||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 34679 cgactatatagaacatatatactttttgggtaatttaacagacggaattcattatatata 34620
Query: 356 acatattggaattaagtgtttcaaacaggga 386
|||||||||||||||||||||||||||||||
Sbjct: 34619 acatattggaattaagtgtttcaaacaggga 34589
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.40 0.715 1.33
Gapped
Lambda K H
1.40 0.715 1.33
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,768
Number of Sequences: 1807
Number of extensions: 15768
Number of successful extensions: 4934
Number of sequences better than 1.0e-20: 1
length of query: 386
length of database: 10,358,551
effective HSP length: 15
effective length of query: 371
effective length of database: 10,331,446
effective search space: 3832966466
effective search space used: 3832966466
T: 0
A: 40
X1: 5 (10.1 bits)
X2: 14 (28.3 bits)
S1: 12 (24.7 bits)
S2: 49 (99.5 bits)